EnhancerDB
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  3. rs1848239[chr1:209583594]
Enhancers that have rs1848239[chr1:209583594]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 209568193 209597635 enh12617
Skin (Keratinocyte) Prostate (PC-3) Cervix (HeLa-S3) Brain (SK-N-MC) Prostate (RWPE1) Esophagus Astrocyte Bone (Osteoblast) Lung (A549) Placenta Colon (HCT116) Uterus Thyroid Peripheral Blood (MM.1S) Lung (PC-9) Breast Spleen Neural Stem Cells (H9) Epithelial (MCF-7)
Transcript factors that have rs1848239[chr1:209583594]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 209583066 209583602 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 21375287
chr1 209583587 209583603 RFX2 JASPAR yes 34972927
chr1 209583587 209583603 RFX3 JASPAR yes 34972928
chr1 209583587 209583603 RFX4 JASPAR yes 34972929
chr1 209583587 209583603 RFX5 JASPAR yes 34972930
chr1 209583588 209583607 RFX2 JASPAR yes 34972931
chr1 209583590 209583605 RFX5 JASPAR yes 34972932
Genes associated with rs1848239[chr1:209583594], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More