EnhancerDB
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  3. rs186087924[chr1:225941492]
Enhancers that have rs186087924[chr1:225941492]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 225938095 225960315 enh12725
Liver Astrocyte Pancreas Uterus Epithelial (MCF-7) Stomach Bone (Osteoblast) Blood (OCI-LY7) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs186087924[chr1:225941492]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 225940873 225942011 SOX2 GTRD no Neural Stem Cells (H9) 21385731
chr1 225940949 225941587 SOX2 GTRD no Neural Stem Cells (H9) 21385733
chr1 225941037 225946019 STAT3 GTRD no Blood (OCI-LY7) 21385734
chr1 225941073 225941975 SOX2 GTRD no Neural Stem Cells (H9) 21385735
chr1 225941167 225941500 SOX2 GTRD no Neural Stem Cells (H9) 21385737
chr1 225941291 225941573 SOX2 GTRD no Neural Stem Cells (H9) 21385739
chr1 225941487 225941497 SP1 JASPAR yes 35767452
chr1 225941488 225941498 SP1 JASPAR yes 35767453
chr1 225941489 225941494 SP1 TRANSFAC yes 35767454
chr1 225941490 225941495 SP1 TRANSFAC yes 35767455
chr1 225941490 225941496 SP1 TRANSFAC yes 35767456
chr1 225941492 225941505 NFKB1 JASPAR yes 35767457
chr1 225941492 225941505 NFKB2 JASPAR yes 35767458
Genes associated with rs186087924[chr1:225941492], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More