EnhancerDB
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  3. rs188001729[chr12:50949804]
Enhancers that have rs188001729[chr12:50949804]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 50906745 50954311 enh2346
Bone Marrow (K562) Liver Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Blood (OCI-LY7) Lung (A549) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs188001729[chr12:50949804]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 50949801 50949805 NFE TRANSFAC yes 120843364
chr12 50949801 50949806 GATA1 TRANSFAC yes 120843365
chr12 50949801 50949807 GATA3 JASPAR yes 120843366
Genes associated with rs188001729[chr12:50949804], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More