EnhancerDB
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  3. rs188127631[chr2:38927903]
Enhancers that have rs188127631[chr2:38927903]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr2 38916069 38955355 enh5435
Brain (SK-N-MC) Astrocyte Colon (HCT116) Adrenal Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Ovary Blood (OCI-LY7) Lung (A549) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Spleen Liver (HepG2) Prostate (RWPE1) Lung Heart
Transcript factors that have rs188127631[chr2:38927903]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr2 38927891 38927903 IRF1 JASPAR yes 73166698
chr2 38927897 38927910 POU3F3 JASPAR yes 73166701
chr2 38927897 38927911 POU1F1 JASPAR yes 73166702
chr2 38927898 38927904 TCF4 TRANSFAC yes 73166703
chr2 38927901 38927916 HNF1A JASPAR yes 73166704
chr2 38927902 38927912 ESX1 JASPAR yes 73166705
chr2 38927902 38927912 GSX2 JASPAR yes 73166706
chr2 38927902 38927912 HOXB2 JASPAR yes 73166707
chr2 38927902 38927912 HOXB3 JASPAR yes 73166708
chr2 38927902 38927912 LHX6 JASPAR yes 73166709
chr2 38927902 38927912 MEOX2 JASPAR yes 73166710
chr2 38927902 38927912 MNX1 JASPAR yes 73166711
chr2 38927902 38927912 POU6F1 JASPAR yes 73166712
chr2 38927902 38927912 RAX JASPAR yes 73166713
chr2 38927902 38927915 HNF1B JASPAR yes 73166714
chr2 38927903 38927911 LMX1A JASPAR yes 73166715
chr2 38927903 38927911 LMX1B JASPAR yes 73166716
chr2 38927903 38927911 NKX6-1 JASPAR yes 73166717
chr2 38927903 38927911 NKX6-2 JASPAR yes 73166718
chr2 38927903 38927911 VAX1 JASPAR yes 73166719
chr2 38927903 38927911 VAX2 JASPAR yes 73166720
chr2 38927903 38927911 VSX1 JASPAR yes 73166721
chr2 38927903 38927911 VSX2 JASPAR yes 73166722
Genes associated with rs188127631[chr2:38927903], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More