EnhancerDB
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  3. rs188230980[chr1:54847496]
Enhancers that have rs188230980[chr1:54847496]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 54820685 54854719 enh11867
Bone Marrow (K562) Liver Colon (HCT116) Adrenal Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Stomach Brain (SK-N-SH) Blood (OCI-LY7) Peripheral Blood (MM.1S) Thyroid Neural Stem Cells (H9) Prostate (PC-3) Blood (GM12878) Placenta Breast Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Lung Heart
Transcript factors that have rs188230980[chr1:54847496]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 54847484 54847499 TFAP2A JASPAR yes 28980569
chr1 54847485 54847496 EBF1 JASPAR yes 28980570
chr1 54847486 54847499 TFAP2A JASPAR yes 28980571
chr1 54847486 54847499 TFAP2B JASPAR yes 28980572
chr1 54847486 54847499 TFAP2C JASPAR yes 28980573
chr1 54847486 54847501 TFAP2A JASPAR yes 28980574
chr1 54847486 54847501 TFAP2C JASPAR yes 28980575
chr1 54847492 54847508 ZNF143 JASPAR yes 28980576
Genes associated with rs188230980[chr1:54847496], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More