EnhancerDB
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  3. rs188239669[chr17:71287000]
Enhancers that have rs188239669[chr17:71287000]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 71282705 71302156 enh17360
Bone Marrow (K562) Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Pancreas Uterus Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Thyroid Peripheral Blood (MM.1S) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
chr17 71286924 71287020 vista25858
VISTA
Transcript factors that have rs188239669[chr17:71287000]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 71286540 71287018 SOX2 GTRD no Neural Stem Cells (H9) 108290922
chr17 71286747 71287247 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 107689355
chr17 71286747 71287247 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 108290924
chr17 71286916 71287065 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107689356
chr17 71286916 71287065 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108290925
chr17 71286994 71287015 ZNF263 JASPAR yes 21289932
chr17 71286994 71287015 ZNF263 JASPAR yes 55858653
chr17 71286997 71287004 SPIB JASPAR yes 21289933
chr17 71286997 71287004 SPIB JASPAR yes 55858654
chr17 71287000 71287021 IRF1 JASPAR yes 21289934
chr17 71287000 71287021 IRF1 JASPAR yes 55858655
Genes associated with rs188239669[chr17:71287000], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More