EnhancerDB
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  3. rs188261646[chr12:52552937]
Enhancers that have rs188261646[chr12:52552937]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 52531174 52553795 enh2357
Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Bone (Osteoblast) Thyroid Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Heart
Transcript factors that have rs188261646[chr12:52552937]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 52552009 52553052 TCF7L2 GTRD no Colon (HCT116) 21546536
chr12 52552750 52553226 TCF7L2 GTRD no Colon (HCT116) 21546537
chr12 52552931 52552941 SP1 JASPAR yes 120923595
chr12 52552931 52552950 PAX5 JASPAR yes 120923596
chr12 52552934 52552939 SP1 TRANSFAC yes 120923597
Genes associated with rs188261646[chr12:52552937], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More