EnhancerDB
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  3. rs188408349[chr12:52597658]
Enhancers that have rs188408349[chr12:52597658]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 52591245 52620175 enh14727
Colon (HCT116) Pancreas Uterus Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Thyroid Pancreas (Panc1) Prostate (PC-3) Cervix (HeLa-S3) Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs188408349[chr12:52597658]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 52597169 52597673 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21546648
chr12 52597169 52597673 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108033663
chr12 52597198 52597694 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 21546650
chr12 52597198 52597694 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 108033665
chr12 52597210 52597706 GATA3 UCSC Txn Factor no Conserved 108033666
chr12 52597229 52597832 TFAP2C UCSC Txn Factor no Conserved 108033668
chr12 52597229 52597832 TFAP2C UCSC Txn Factor no Conserved 108033669
chr12 52597238 52597808 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 21546652
chr12 52597238 52597808 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 108033670
chr12 52597238 52597808 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 108033671
chr12 52597251 52597707 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21546654
chr12 52597251 52597707 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108033674
chr12 52597316 52597832 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21546655
chr12 52597316 52597832 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108033675
chr12 52597316 52597832 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108033676
chr12 52597345 52597755 GATA2 UCSC Txn Factor no Conserved 108033677
chr12 52597345 52597755 GATA2 UCSC Txn Factor no Conserved 108033678
chr12 52597447 52597831 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 21546657
chr12 52597447 52597831 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 108033680
chr12 52597447 52597831 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 108033681
chr12 52597652 52597669 RARA JASPAR yes 120927509
Genes associated with rs188408349[chr12:52597658], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More