EnhancerDB
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  3. rs188543350[chr1:201508742]
Enhancers that have rs188543350[chr1:201508742]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 201492445 201517481 enh12522
Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Prostate (RWPE1) Esophagus Astrocyte Lung (PC-9) Bone (Osteoblast) Stomach Muscle (A673) Placenta Colon (HCT116) Uterus Muscle (Myoblast) Pancreas Spleen Neural Stem Cells (H9) Heart
chr1 201508517 201509575 vista4558
VISTA
Transcript factors that have rs188543350[chr1:201508742]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 201504593 201515974 ZNF143 GTRD no Epithelial (MCF-7) 107856607
chr1 201504593 201515974 ZNF143 GTRD no Epithelial (MCF-7) 107856608
chr1 201505228 201509085 ZNF143 GTRD no Epithelial (MCF-7) 107856609
chr1 201507652 201509722 POLR2A UCSC Txn Factor no Conserved 107856610
chr1 201508298 201508954 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 107856613
chr1 201508511 201509475 AR GTRD no Prostate (PC-3) 21364574
chr1 201508511 201509475 AR GTRD no Prostate (PC-3) 107856614
chr1 201508567 201509011 GATA2 UCSC Txn Factor no Conserved 107856615
chr1 201508639 201509295 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 107856616
chr1 201508666 201509076 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 107856617
chr1 201508671 201508991 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107856618
chr1 201508729 201508744 ZIC3 JASPAR yes 34504116
chr1 201508729 201508744 ZIC4 JASPAR yes 34504117
chr1 201508729 201508744 ZIC3 JASPAR yes 118431976
chr1 201508729 201508744 ZIC4 JASPAR yes 118431977
chr1 201508730 201508744 GLIS2 JASPAR yes 34504118
chr1 201508730 201508744 GLIS3 JASPAR yes 34504119
chr1 201508730 201508744 ZIC1 JASPAR yes 34504120
chr1 201508730 201508744 GLIS2 JASPAR yes 118431978
chr1 201508730 201508744 GLIS3 JASPAR yes 118431979
chr1 201508730 201508744 ZIC1 JASPAR yes 118431980
Genes associated with rs188543350[chr1:201508742], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More