EnhancerDB
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  3. rs188574938[chr17:34234317]
Enhancers that have rs188574938[chr17:34234317]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 34213485 34236135 enh17119
Skin (Keratinocyte) Brain (SK-N-SH) Brain (SK-N-MC) Large Intestine Blood (T-cell) Astrocyte Bone (Osteoblast) Blood (GM12878) Stomach Placenta Peripheral Blood (MM.1S) Muscle (Myotube) Neural Stem Cells (H9) Thymus Epithelial (MCF-7)
Transcript factors that have rs188574938[chr17:34234317]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 34233908 34235052 SOX2 GTRD no Neural Stem Cells (H9) 21751126
chr17 34233967 34235051 SOX2 GTRD no Neural Stem Cells (H9) 21751127
chr17 34234069 34234526 SOX2 GTRD no Neural Stem Cells (H9) 21751129
chr17 34234077 34235044 SOX2 GTRD no Neural Stem Cells (H9) 21751130
chr17 34234128 34234725 SOX2 GTRD no Neural Stem Cells (H9) 21751131
chr17 34234146 34234488 SOX2 GTRD no Neural Stem Cells (H9) 21751132
chr17 34234182 34234637 SOX2 GTRD no Neural Stem Cells (H9) 21751133
chr17 34234226 34234465 SOX2 GTRD no Neural Stem Cells (H9) 21751134
chr17 34234235 34234528 SOX2 GTRD no Neural Stem Cells (H9) 21751135
chr17 34234317 34234328 NFKB1 JASPAR yes 54021551
Genes associated with rs188574938[chr17:34234317], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More