EnhancerDB
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  3. rs188988825[chr1:203475329]
Enhancers that have rs188988825[chr1:203475329]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 203471885 203497995 enh12556
Astrocyte Colon (HCT116) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Brain (SK-N-SH) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Spleen Muscle (Myotube) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs188988825[chr1:203475329]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 203474819 203476480 ZNF274 GTRD no Cervix (HeLa-S3) 21368984
chr1 203475060 203476643 ZNF143 GTRD no Epithelial (MCF-7) 21368985
chr1 203475178 203476125 ZNF143 GTRD no Epithelial (MCF-7) 21368986
chr1 203475275 203475972 TCF7L2 GTRD no Colon (HCT116) 21368987
chr1 203475303 203476222 ZNF143 GTRD no Epithelial (MCF-7) 21368988
chr1 203475315 203475329 PLAG1 JASPAR yes 34632821
chr1 203475317 203475329 TFAP2A JASPAR yes 34632822
chr1 203475317 203475329 TFAP2B JASPAR yes 34632823
chr1 203475317 203475330 TFAP2A JASPAR yes 34632824
chr1 203475317 203475330 TFAP2B JASPAR yes 34632825
chr1 203475317 203475330 TFAP2C JASPAR yes 34632826
chr1 203475317 203475332 TFAP2C JASPAR yes 34632827
chr1 203475318 203475329 EBF1 JASPAR yes 34632828
chr1 203475318 203475333 ZIC3 JASPAR yes 34632829
chr1 203475320 203475335 NR2C2 JASPAR yes 34632830
chr1 203475327 203476271 ZNF143 GTRD no Epithelial (MCF-7) 21368989
Genes associated with rs188988825[chr1:203475329], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More