EnhancerDB
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  3. rs189467564[chr1:55029936]
Enhancers that have rs189467564[chr1:55029936]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 55021705 55049987 enh11873
Colon (HCT116) Pancreas Uterus Epithelial (MCF-7) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Thyroid Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Spleen Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs189467564[chr1:55029936]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 55029920 55029941 IRF1 JASPAR yes 28992867
chr1 55029925 55029946 IRF1 JASPAR yes 28992868
chr1 55029926 55029947 IRF1 JASPAR yes 28992869
chr1 55029929 55029944 FOXP1 JASPAR yes 28992870
chr1 55029931 55029946 FOXP1 JASPAR yes 28992871
chr1 55029931 55029946 MEF2C JASPAR yes 28992872
chr1 55029932 55029953 IRF1 JASPAR yes 28992873
chr1 55029933 55029948 FOXP1 JASPAR yes 28992874
chr1 55029934 55029955 IRF1 JASPAR yes 28992875
chr1 55029935 55029941 TBP TRANSFAC yes 28992876
chr1 55029936 55029957 IRF1 JASPAR yes 28992877
Genes associated with rs189467564[chr1:55029936], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More