EnhancerDB
  1. Home
  2. SNP
  3. rs189799968[chr1:201429109]
Enhancers that have rs189799968[chr1:201429109]
Back to top
Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 201414985 201433510 enh875
Brain (SK-N-MC) Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Ovary Bone (Osteoblast) Blood (OCI-LY7) Lung (A549) Pancreas (Panc1) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Spleen Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs189799968[chr1:201429109]
Back to top
Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 201428739 201429255 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21364082
chr1 201428969 201431998 ZNF143 GTRD no Epithelial (MCF-7) 21364083
chr1 201428969 201431998 ZNF143 GTRD no Epithelial (MCF-7) 107856210
chr1 201429093 201429112 REST JASPAR yes 34496147
chr1 201429095 201429110 RFX5 JASPAR yes 34496148
chr1 201429098 201429113 TFAP2A JASPAR yes 34496150
chr1 201429098 201429113 TFAP2C JASPAR yes 34496151
chr1 201429099 201429110 EBF1 JASPAR yes 34496152
chr1 201429099 201429110 TFAP2A JASPAR yes 34496153
chr1 201429099 201429110 TFAP2B JASPAR yes 34496154
chr1 201429099 201429110 TFAP2C JASPAR yes 34496155
chr1 201429100 201429109 TFAP2A JASPAR yes 34496156
chr1 201429105 201429109 LFA1 TRANSFAC yes 34496157
Genes associated with rs189799968[chr1:201429109], comfirmed by eQTL
Back to top
Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More