EnhancerDB
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  3. rs189868073[chr19:13139080]
Enhancers that have rs189868073[chr19:13139080]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr19 13138760 13157647 enh17929
Astrocyte Colon (HCT116) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs189868073[chr19:13139080]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr19 13137700 13139751 TCF7L2 GTRD no Colon (HCT116) 21850165
chr19 13137700 13139751 TCF7L2 GTRD no Colon (HCT116) 108387471
chr19 13137716 13139203 TCF7L2 GTRD no Colon (HCT116) 21850166
chr19 13137716 13139203 TCF7L2 GTRD no Colon (HCT116) 108387472
chr19 13137819 13139381 TCF7L2 GTRD no Colon (HCT116) 21850167
chr19 13137819 13139381 TCF7L2 GTRD no Colon (HCT116) 108387474
chr19 13138056 13139319 TCF7L2 GTRD no Colon (HCT116) 21850168
chr19 13138056 13139319 TCF7L2 GTRD no Colon (HCT116) 108387476
chr19 13139073 13139083 SP1 JASPAR yes 112502283
chr19 13139080 13139085 SP1 TRANSFAC yes 112502284
chr19 13139080 13139087 SP1 TRANSFAC yes 112502285
Genes associated with rs189868073[chr19:13139080], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More