EnhancerDB
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  3. rs190312390[chr1:235249556]
Enhancers that have rs190312390[chr1:235249556]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 235240345 235251255 enh12800
Brain (SK-N-MC) Astrocyte Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Bone (Osteoblast) Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Breast Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Heart
Transcript factors that have rs190312390[chr1:235249556]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 235249540 235249561 IRF1 JASPAR yes 36350079
chr1 235249541 235249556 FOXP1 JASPAR yes 36350080
chr1 235249541 235249562 IRF1 JASPAR yes 36350081
chr1 235249542 235249557 FOXP1 JASPAR yes 36350082
chr1 235249542 235249563 IRF1 JASPAR yes 36350083
chr1 235249543 235249558 FOXP1 JASPAR yes 36350084
chr1 235249544 235249559 FOXP1 JASPAR yes 36350085
chr1 235249544 235249565 IRF1 JASPAR yes 36350086
chr1 235249545 235249560 FOXP1 JASPAR yes 36350087
chr1 235249545 235249566 IRF1 JASPAR yes 36350088
chr1 235249546 235249561 FOXP1 JASPAR yes 36350089
chr1 235249549 235249564 STAT2 JASPAR yes 36350090
Genes associated with rs190312390[chr1:235249556], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More