EnhancerDB
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  3. rs190897549[chr1:203481270]
Enhancers that have rs190897549[chr1:203481270]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 203471885 203497995 enh12556
Astrocyte Colon (HCT116) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Brain (SK-N-SH) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Spleen Muscle (Myotube) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs190897549[chr1:203481270]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 203479781 203481906 ZNF143 GTRD no Epithelial (MCF-7) 21369011
chr1 203479893 203481935 ZNF143 GTRD no Epithelial (MCF-7) 21369012
chr1 203479963 203481349 ZNF274 GTRD no Cervix (HeLa-S3) 21369013
chr1 203479998 203481659 ZNF274 GTRD no Cervix (HeLa-S3) 21369016
chr1 203480026 203481815 ZNF143 GTRD no Epithelial (MCF-7) 21369018
chr1 203480077 203481590 ZNF274 GTRD no Cervix (HeLa-S3) 21369019
chr1 203480093 203481879 ZNF274 GTRD no Cervix (HeLa-S3) 21369020
chr1 203480152 203481283 ZBTB33 GTRD no Brain (SK-N-SH) 21369021
chr1 203480171 203481527 ZNF143 GTRD no Epithelial (MCF-7) 21369022
chr1 203480177 203481271 ZBTB33 GTRD no Brain (SK-N-SH) 21369023
chr1 203480181 203481349 ZBTB33 GTRD no Brain (SK-N-SH) 21369024
chr1 203480206 203481270 ERG GTRD no Prostate (RWPE1) 21369025
chr1 203480216 203481310 TCF7L2 GTRD no Colon (HCT116) 21369026
chr1 203480228 203481310 ZBTB33 GTRD no Brain (SK-N-SH) 21369027
chr1 203480238 203481449 ZBTB33 GTRD no Brain (SK-N-SH) 21369029
chr1 203480243 203481351 ZBTB33 GTRD no Brain (SK-N-SH) 21369030
chr1 203480297 203481333 ZNF143 GTRD no Epithelial (MCF-7) 21369033
chr1 203480299 203481307 ZNF274 GTRD no Cervix (HeLa-S3) 21369034
chr1 203480370 203481434 ZNF143 GTRD no Epithelial (MCF-7) 21369043
chr1 203480385 203481343 ZBTB33 GTRD no Brain (SK-N-SH) 21369046
chr1 203480400 203481424 ZNF143 GTRD no Epithelial (MCF-7) 21369049
chr1 203480414 203481309 ZNF143 GTRD no Epithelial (MCF-7) 21369051
chr1 203480499 203481618 ZNF143 GTRD no Epithelial (MCF-7) 21369055
chr1 203480516 203481475 ZNF143 GTRD no Epithelial (MCF-7) 21369056
chr1 203480550 203481373 ZNF143 GTRD no Epithelial (MCF-7) 21369058
chr1 203480561 203481300 ZNF143 GTRD no Epithelial (MCF-7) 21369060
chr1 203480577 203481294 ZNF143 GTRD no Epithelial (MCF-7) 21369062
chr1 203480642 203481565 ZNF274 GTRD no Cervix (HeLa-S3) 21369069
chr1 203480664 203481286 ZNF143 GTRD no Epithelial (MCF-7) 21369071
chr1 203481251 203481271 RREB1 JASPAR yes 34633771
chr1 203481253 203481273 RREB1 JASPAR yes 34633772
chr1 203481254 203481274 RREB1 JASPAR yes 34633773
chr1 203481260 203481270 SP1 JASPAR yes 34633777
chr1 203481261 203481276 TFAP2C JASPAR yes 34633778
chr1 203481263 203481276 TFAP2A JASPAR yes 34633779
chr1 203481263 203481276 TFAP2B JASPAR yes 34633780
chr1 203481263 203481276 TFAP2C JASPAR yes 34633781
chr1 203481264 203481275 EBF1 JASPAR yes 34633782
Genes associated with rs190897549[chr1:203481270], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More