EnhancerDB
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  3. rs192902479[chr1:16500200]
Enhancers that have rs192902479[chr1:16500200]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 16486025 16524255 enh11545
Bone Marrow (K562) Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Thyroid Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
chr1 16500084 16500309 vista524
VISTA
Transcript factors that have rs192902479[chr1:16500200]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 16500191 16500206 TFAP2C JASPAR yes 27031095
chr1 16500191 16500206 TFAP2C JASPAR yes 118238818
chr1 16500193 16500205 TFAP2A JASPAR yes 27031096
chr1 16500193 16500205 TFAP2B JASPAR yes 27031097
chr1 16500193 16500205 TFAP2C JASPAR yes 27031098
chr1 16500193 16500205 TFAP2A JASPAR yes 118238819
chr1 16500193 16500205 TFAP2B JASPAR yes 118238820
chr1 16500193 16500205 TFAP2C JASPAR yes 118238821
chr1 16500193 16500208 TFAP2A JASPAR yes 27031099
chr1 16500193 16500208 TFAP2C JASPAR yes 27031100
chr1 16500193 16500208 TFAP2A JASPAR yes 118238822
chr1 16500193 16500208 TFAP2C JASPAR yes 118238823
chr1 16500194 16500205 TFAP2A JASPAR yes 27031101
chr1 16500194 16500205 TFAP2B JASPAR yes 27031102
chr1 16500194 16500205 TFAP2C JASPAR yes 27031103
chr1 16500194 16500205 TFAP2A JASPAR yes 118238824
chr1 16500194 16500205 TFAP2B JASPAR yes 118238825
chr1 16500194 16500205 TFAP2C JASPAR yes 118238826
chr1 16500195 16500204 TFAP2A JASPAR yes 27031104
chr1 16500195 16500204 TFAP2A JASPAR yes 118238827
chr1 16500200 16500204 LFA1 TRANSFAC yes 27031105
chr1 16500200 16500204 LFA1 TRANSFAC yes 118238828
Genes associated with rs192902479[chr1:16500200], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More