EnhancerDB
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  3. rs192979490[chr6:35569946]
Enhancers that have rs192979490[chr6:35569946]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr6 35560685 35576643 enh9078
Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Brain (SK-N-SH) Peripheral Blood (MM.1S) Thyroid Neural Stem Cells (H9) Thymus Prostate (PC-3) Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
chr6 35569141 35569999 vista51718
VISTA
Transcript factors that have rs192979490[chr6:35569946]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr6 35569512 35570008 TCF7L2 UCSC Txn Factor no Conserved 108539861
chr6 35569674 35570012 NR3C1 UCSC Txn Factor no Conserved 108539862
chr6 35569933 35569954 ZNF263 JASPAR yes 70353098
chr6 35569933 35569954 ZNF263 JASPAR yes 101294126
chr6 35569934 35569955 IRF1 JASPAR yes 70353099
chr6 35569934 35569955 IRF1 JASPAR yes 101294127
chr6 35569938 35569952 STAT1 JASPAR yes 70353100
chr6 35569938 35569952 STAT1 JASPAR yes 101294128
chr6 35569938 35569953 PRDM1 JASPAR yes 70353101
chr6 35569938 35569953 STAT2 JASPAR yes 70353102
chr6 35569938 35569953 PRDM1 JASPAR yes 101294129
chr6 35569938 35569953 STAT2 JASPAR yes 101294130
chr6 35569940 35569961 IRF1 JASPAR yes 70353103
chr6 35569940 35569961 IRF1 JASPAR yes 101294131
chr6 35569942 35569947 ETS2 TRANSFAC yes 70353104
chr6 35569942 35569947 ETS2 TRANSFAC yes 101294132
Genes associated with rs192979490[chr6:35569946], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More