EnhancerDB
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  3. rs1961677[chr1:209589359]
Enhancers that have rs1961677[chr1:209589359]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 209568193 209597635 enh12617
Skin (Keratinocyte) Prostate (PC-3) Cervix (HeLa-S3) Brain (SK-N-MC) Prostate (RWPE1) Esophagus Astrocyte Bone (Osteoblast) Lung (A549) Placenta Colon (HCT116) Uterus Thyroid Peripheral Blood (MM.1S) Lung (PC-9) Breast Spleen Neural Stem Cells (H9) Epithelial (MCF-7)
Transcript factors that have rs1961677[chr1:209589359]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 209588329 209589428 ZNF274 GTRD no Cervix (HeLa-S3) 21375371
chr1 209588329 209589428 ZNF274 GTRD no Cervix (HeLa-S3) 107865764
chr1 209589359 209589368 SNAI2 JASPAR yes 34973764
chr1 209589359 209589369 FIGLA JASPAR yes 34973765
chr1 209589359 209589369 TCF3 JASPAR yes 34973766
Genes associated with rs1961677[chr1:209589359], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More