EnhancerDB
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  3. rs196954[chr17:62158623]
Enhancers that have rs196954[chr17:62158623]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 62157225 62175223 enh17290
Liver Astrocyte Colon (HCT116) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Blood (OCI-LY7) Peripheral Blood (MM.1S) Pancreas (Panc1) Prostate (PC-3) Cervix (HeLa-S3) Esophagus Placenta Lung (PC-9) Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs196954[chr17:62158623]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 62158620 62158638 NFYA JASPAR yes 55275028
chr17 62158621 62158624 MYB TRANSFAC yes 55275029
chr17 62158623 62158639 NFYA JASPAR yes 55275030
Genes associated with rs196954[chr17:62158623], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More