EnhancerDB
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  3. rs1971365[chr17:62957720]
Enhancers that have rs1971365[chr17:62957720]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 62953485 63000035 enh4531
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Blood (Karpas-422) Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Lung (A549) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Thymus Prostate (PC-3) Cervix (HeLa-S3) Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs1971365[chr17:62957720]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 62952883 62958112 ZNF143 GTRD no Epithelial (MCF-7) 21779990
chr17 62954118 62958130 ZNF143 GTRD no Epithelial (MCF-7) 21779997
chr17 62957288 62957832 ZNF143 GTRD no Epithelial (MCF-7) 21780032
chr17 62957290 62958043 ZNF143 GTRD no Epithelial (MCF-7) 21780033
chr17 62957329 62957813 ZNF143 GTRD no Epithelial (MCF-7) 21780034
chr17 62957348 62957821 ZNF143 GTRD no Epithelial (MCF-7) 21780035
chr17 62957709 62957720 USF1 JASPAR yes 55331620
chr17 62957709 62957720 USF2 JASPAR yes 55331621
chr17 62957710 62957720 NEUROD2 JASPAR yes 55331622
chr17 62957715 62957726 CEBPB JASPAR yes 55331623
chr17 62957715 62957736 IRF1 JASPAR yes 55331624
chr17 62957720 62958076 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21780036
Genes associated with rs1971365[chr17:62957720], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More