EnhancerDB
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  3. rs199594343[chr17:62953846]
Enhancers that have rs199594343[chr17:62953846]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 62953485 63000035 enh4531
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Blood (Karpas-422) Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Lung (A549) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Thymus Prostate (PC-3) Cervix (HeLa-S3) Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs199594343[chr17:62953846]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 62952883 62958112 ZNF143 GTRD no Epithelial (MCF-7) 21779990
chr17 62953667 62955028 ZNF143 GTRD no Epithelial (MCF-7) 21779991
chr17 62953744 62957520 ZNF143 GTRD no Epithelial (MCF-7) 21779992
chr17 62953814 62954393 ZNF143 GTRD no Epithelial (MCF-7) 21779993
chr17 62953841 62953851 GCM2 JASPAR yes 55330864
Genes associated with rs199594343[chr17:62953846], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More