EnhancerDB
  1. Home
  2. SNP
  3. rs199990601[chr1:223900906]
Enhancers that have rs199990601[chr1:223900906]
Back to top
Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 223886085 223931782 enh12712
Bone Marrow (K562) Brain (SK-N-MC) Colon (HCT116) Adrenal Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Ovary Bone (Osteoblast) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs199990601[chr1:223900906]
Back to top
Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 223899892 223901978 POLR2A UCSC Txn Factor no Conserved 107873036
chr1 223900904 223900910 LEF1 TRANSFAC yes 35671238
chr1 223900904 223900910 TCF4 TRANSFAC yes 35671239
Genes associated with rs199990601[chr1:223900906], comfirmed by eQTL
Back to top
Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More