EnhancerDB
  1. Home
  2. SNP
  3. rs200217838[chr3:56949052]
Enhancers that have rs200217838[chr3:56949052]
Back to top
Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr3 56948005 56967995 enh7237
Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Stomach Skin (Keratinocyte) Bone (Osteoblast) Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Lung Heart
Transcript factors that have rs200217838[chr3:56949052]
Back to top
Chrom. Start End TF name Source Predicted site? Tissue id More
chr3 56949042 56949053 RUNX1 JASPAR yes 2610432
chr3 56949045 56949060 FOXP1 JASPAR yes 2610433
chr3 56949046 56949057 HOXA10 JASPAR yes 2610434
chr3 56949047 56949056 CDX1 JASPAR yes 2610435
chr3 56949047 56949057 HOXA13 JASPAR yes 2610436
chr3 56949047 56949057 HOXB13 JASPAR yes 2610437
chr3 56949047 56949057 HOXD13 JASPAR yes 2610438
chr3 56949051 56949057 TBP TRANSFAC yes 2610439
chr3 56949051 56949072 IRF1 JASPAR yes 2610440
Genes associated with rs200217838[chr3:56949052], comfirmed by eQTL
Back to top
Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More