EnhancerDB
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  3. rs200226542[chr19:13956569]
Enhancers that have rs200226542[chr19:13956569]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr19 13941465 13967615 enh5016
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Ovary Bone (Osteoblast) Blood (OCI-LY7) Peripheral Blood (MM.1S) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs200226542[chr19:13956569]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr19 13955441 13956851 ZNF143 GTRD no Epithelial (MCF-7) 21852243
chr19 13955441 13956851 ZNF143 GTRD no Epithelial (MCF-7) 108390188
chr19 13955484 13956974 ZNF143 GTRD no Epithelial (MCF-7) 21852246
chr19 13955484 13956974 ZNF143 GTRD no Epithelial (MCF-7) 108390191
chr19 13955562 13956783 ZNF143 GTRD no Epithelial (MCF-7) 21852252
chr19 13955562 13956783 ZNF143 GTRD no Epithelial (MCF-7) 108390197
chr19 13955657 13956865 ZNF143 GTRD no Epithelial (MCF-7) 21852257
chr19 13956231 13956617 TCF7L2 GTRD no Colon (HCT116) 21852259
chr19 13956319 13956810 ZNF274 GTRD no Bone Marrow (K562) 21852261
chr19 13956336 13956778 ZNF274 GTRD no Bone Marrow (K562) 21852262
chr19 13956558 13956569 FOXB1 JASPAR yes 112537549
chr19 13956559 13956570 FOXB1 JASPAR yes 112537551
chr19 13956560 13956571 FOXB1 JASPAR yes 112537552
chr19 13956561 13956569 FOXL1 JASPAR yes 112537553
chr19 13956561 13956572 FOXB1 JASPAR yes 112537554
chr19 13956562 13956573 FOXB1 JASPAR yes 112537555
chr19 13956563 13956571 FOXL1 JASPAR yes 112537556
chr19 13956563 13956574 FOXB1 JASPAR yes 112537557
chr19 13956564 13956575 FOXB1 JASPAR yes 112537558
chr19 13956564 13956579 MEF2A JASPAR yes 112537559
chr19 13956565 13956573 FOXL1 JASPAR yes 112537560
chr19 13956565 13956577 MEF2A JASPAR yes 112537561
chr19 13956566 13956576 MEF2A JASPAR yes 112537562
chr19 13956567 13956575 FOXL1 JASPAR yes 112537563
Genes associated with rs200226542[chr19:13956569], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More