EnhancerDB
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  3. rs200554235[chr12:52600859]
Enhancers that have rs200554235[chr12:52600859]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 52591245 52620175 enh14727
Colon (HCT116) Pancreas Uterus Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Thyroid Pancreas (Panc1) Prostate (PC-3) Cervix (HeLa-S3) Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs200554235[chr12:52600859]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 52600790 52601632 TCF7L2 GTRD no Colon (HCT116) 21546663
chr12 52600806 52601322 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21546664
chr12 52600832 52601362 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21546665
chr12 52600846 52600861 NR2C2 JASPAR yes 120927902
chr12 52600855 52600863 TBX15 JASPAR yes 120927903
chr12 52600856 52600861 SP1 TRANSFAC yes 120927904
Genes associated with rs200554235[chr12:52600859], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More