EnhancerDB
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  3. rs200559257[chr5:154150078]
Enhancers that have rs200559257[chr5:154150078]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr5 154145125 154165844 enh8815
Liver Astrocyte Colon (HCT116) Adrenal Blood (Karpas-422) Blood (T-cell) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Lung (A549) Thyroid Neural Stem Cells (H9) Thymus Cervix (HeLa-S3) Large Intestine Blood (GM12878) Placenta Lung (PC-9) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs200559257[chr5:154150078]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr5 154150070 154150080 SP1 JASPAR yes 67056760
chr5 154150071 154150086 TFAP2A JASPAR yes 67056761
chr5 154150071 154150086 TFAP2C JASPAR yes 67056762
chr5 154150073 154150079 NFE2 TRANSFAC yes 67056763
chr5 154150074 154150085 TFAP2A JASPAR yes 67056764
chr5 154150074 154150086 TFAP2A JASPAR yes 67056765
chr5 154150074 154150086 TFAP2B JASPAR yes 67056766
chr5 154150074 154150086 TFAP2C JASPAR yes 67056767
chr5 154150075 154150084 TFAP2A JASPAR yes 67056768
chr5 154150078 154150093 NR2C2 JASPAR yes 67056769
Genes associated with rs200559257[chr5:154150078], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More