EnhancerDB
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  3. rs200624150[chr17:55487952]
Enhancers that have rs200624150[chr17:55487952]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 55477469 55505815 enh4487
Brain (SK-N-MC) Blood (Karpas-422) Pancreas Uterus Stomach Brain (SK-N-SH) Blood (OCI-LY7) Lung (A549) Thyroid Peripheral Blood (MM.1S) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Blood (GM12878) Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs200624150[chr17:55487952]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 55487942 55487952 ALX3 JASPAR yes 54952106
chr17 55487942 55487952 GSX2 JASPAR yes 54952107
chr17 55487942 55487952 MIXL1 JASPAR yes 54952108
chr17 55487942 55487952 MNX1 JASPAR yes 54952109
chr17 55487943 55487956 DUXA JASPAR yes 54952120
chr17 55487944 55487955 DUX4 JASPAR yes 54952121
chr17 55487944 55487955 PHOX2A JASPAR yes 54952122
chr17 55487944 55487955 PROP1 JASPAR yes 54952123
chr17 55487949 55487970 IRF1 JASPAR yes 54952124
chr17 55487950 55487965 FOXP1 JASPAR yes 54952125
Genes associated with rs200624150[chr17:55487952], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More