EnhancerDB
  1. Home
  2. SNP
  3. rs200672496[chr12:52546650]
Enhancers that have rs200672496[chr12:52546650]
Back to top
Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 52531174 52553795 enh2357
Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Bone (Osteoblast) Thyroid Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Heart
Transcript factors that have rs200672496[chr12:52546650]
Back to top
Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 52545847 52546819 ZBTB33 GTRD no Lung (A549) 108033310
chr12 52546045 52546697 ZNF143 GTRD no Epithelial (MCF-7) 21546506
chr12 52546045 52546697 ZNF143 GTRD no Epithelial (MCF-7) 108033351
chr12 52546150 52547035 ZNF143 GTRD no Epithelial (MCF-7) 21546508
chr12 52546169 52546718 TCF7L2 GTRD no Colon (HCT116) 21546510
chr12 52546232 52546816 TCF7L2 GTRD no Colon (HCT116) 21546512
chr12 52546650 52546660 SP1 JASPAR yes 120922639
Genes associated with rs200672496[chr12:52546650], comfirmed by eQTL
Back to top
Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More