EnhancerDB
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  3. rs200778586[chr1:54781281]
Enhancers that have rs200778586[chr1:54781281]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 54761072 54782679 enh11866
Liver (HepG2) Brain (SK-N-SH) Large Intestine Blood (T-cell) Esophagus Astrocyte Bone (Osteoblast) Stomach Placenta Thyroid Uterus Embryonic Stem Cell Line (H1-hESC) Pancreas Spleen Muscle (Myotube) Neural Stem Cells (H9) Thymus Heart
Transcript factors that have rs200778586[chr1:54781281]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 54781268 54781283 MEF2C JASPAR yes 28972430
chr1 54781268 54781289 IRF1 JASPAR yes 28972431
chr1 54781270 54781285 FOXP1 JASPAR yes 28972432
chr1 54781271 54781286 FOXP1 JASPAR yes 28972433
chr1 54781272 54781287 FOXP1 JASPAR yes 28972435
chr1 54781273 54781288 FOXP1 JASPAR yes 28972436
chr1 54781274 54781289 FOXP1 JASPAR yes 28972437
chr1 54781274 54781295 IRF1 JASPAR yes 28972438
chr1 54781275 54781290 FOXP1 JASPAR yes 28972439
chr1 54781276 54781291 FOXP1 JASPAR yes 28972440
Genes associated with rs200778586[chr1:54781281], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More