EnhancerDB
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  3. rs200829597[chr12:65012423]
Enhancers that have rs200829597[chr12:65012423]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 65008245 65038815 enh2404
Bone Marrow (K562) Liver Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs200829597[chr12:65012423]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 65012405 65012425 RREB1 JASPAR yes 121416255
chr12 65012405 65012426 IRF1 JASPAR yes 121416256
chr12 65012406 65012427 IRF1 JASPAR yes 121416259
chr12 65012410 65012424 IRF7 JASPAR yes 121416262
chr12 65012411 65012431 RREB1 JASPAR yes 121416263
chr12 65012411 65012432 IRF1 JASPAR yes 121416264
chr12 65012412 65012427 FOXP1 JASPAR yes 121416266
chr12 65012412 65012433 IRF1 JASPAR yes 121416267
chr12 65012413 65012428 STAT2 JASPAR yes 121416268
chr12 65012416 65012428 IRF1 JASPAR yes 121416269
chr12 65012418 65012424 TCF4 TRANSFAC yes 121416270
chr12 65012418 65012433 FOXP1 JASPAR yes 121416271
chr12 65012419 65012430 FOXP2 JASPAR yes 121416272
chr12 65012419 65012431 FOXC2 JASPAR yes 121416273
Genes associated with rs200829597[chr12:65012423], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More