EnhancerDB
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  3. rs200898674[chr1:17897344]
Enhancers that have rs200898674[chr1:17897344]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 17883825 17906655 enh11558
Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Stomach Brain (SK-N-SH) Bone (Osteoblast) Thyroid Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Lung Heart
Transcript factors that have rs200898674[chr1:17897344]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 17897341 17897352 TBX20 JASPAR yes 27103239
chr1 17897341 17897352 TBX2 JASPAR yes 27103240
chr1 17897342 17897350 MGA JASPAR yes 27103241
chr1 17897342 17897350 TBX15 JASPAR yes 27103242
chr1 17897342 17897350 TBX1 JASPAR yes 27103243
chr1 17897342 17897350 TBX4 JASPAR yes 27103244
chr1 17897342 17897350 TBX5 JASPAR yes 27103245
chr1 17897342 17897355 SMAD2 JASPAR yes 27103246
Genes associated with rs200898674[chr1:17897344], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More