EnhancerDB
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Enhancers that have rs201425841[chr1:201714958]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 201710292 201749335 enh12527
Cervix (HeLa-S3) Brain (SK-N-MC) Prostate (RWPE1) Esophagus Astrocyte Lung (A549) Stomach Muscle (A673) Placenta Thyroid Uterus Peripheral Blood (MM.1S) Lung (PC-9) Muscle (Myoblast) Neural Stem Cells (H9) Heart
Transcript factors that have rs201425841[chr1:201714958]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 201711159 201716773 ZNF274 GTRD no Cervix (HeLa-S3) 21365291
chr1 201711159 201716773 ZNF274 GTRD no Cervix (HeLa-S3) 107857068
chr1 201711501 201715159 ZNF143 GTRD no Epithelial (MCF-7) 107857070
chr1 201711669 201715412 ZNF143 GTRD no Epithelial (MCF-7) 107857073
chr1 201711731 201715165 ZNF274 GTRD no Cervix (HeLa-S3) 21365293
chr1 201711731 201715165 ZNF274 GTRD no Cervix (HeLa-S3) 107857074
chr1 201714947 201714958 PROP1 JASPAR yes 34527686
chr1 201714949 201714959 HOXA13 JASPAR yes 34527687
chr1 201714949 201714959 HOXB13 JASPAR yes 34527688
chr1 201714949 201714959 HOXD13 JASPAR yes 34527689
chr1 201714949 201714960 HOXA10 JASPAR yes 34527690
chr1 201714950 201714959 CDX1 JASPAR yes 34527691
chr1 201714950 201714961 CDX2 JASPAR yes 34527692
chr1 201714955 201714967 FOXI1 JASPAR yes 34527693
chr1 201714955 201714970 FOXP1 JASPAR yes 34527694
chr1 201714956 201714968 FOXC2 JASPAR yes 34527695
chr1 201714956 201714970 ONECUT3 JASPAR yes 34527696
chr1 201714957 201714968 FOXB1 JASPAR yes 34527697
chr1 201714957 201714968 FOXC1 JASPAR yes 34527698
chr1 201714957 201714973 POU4F2 JASPAR yes 34527699
chr1 201714957 201714973 POU4F3 JASPAR yes 34527700
chr1 201714958 201714962 YY1 TRANSFAC yes 34527701
chr1 201714958 201714973 FOXA1 JASPAR yes 34527702
Genes associated with rs201425841[chr1:201714958], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More