EnhancerDB
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  3. rs202027049[chr19:2554561]
Enhancers that have rs202027049[chr19:2554561]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr19 2521384 2555115 enh4959
Bone Marrow (K562) Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Adrenal Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Kidney Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Lung (A549) Thyroid Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Spleen Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs202027049[chr19:2554561]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr19 2554554 2554565 FOXC1 JASPAR yes 112074086
chr19 2554556 2554571 FOXP1 JASPAR yes 112074088
chr19 2554557 2554572 FOXP1 JASPAR yes 112074089
chr19 2554558 2554573 FOXP1 JASPAR yes 112074090
Genes associated with rs202027049[chr19:2554561], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More