EnhancerDB
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  3. rs202043472[chr19:13959728]
Enhancers that have rs202043472[chr19:13959728]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr19 13941465 13967615 enh5016
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Ovary Bone (Osteoblast) Blood (OCI-LY7) Peripheral Blood (MM.1S) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs202043472[chr19:13959728]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr19 13958960 13961534 TCF7L2 GTRD no Colon (HCT116) 21852522
chr19 13958960 13961534 TCF7L2 GTRD no Colon (HCT116) 108390514
chr19 13958960 13961534 TCF7L2 GTRD no Colon (HCT116) 108390515
chr19 13958977 13961555 TCF7L2 GTRD no Colon (HCT116) 21852523
chr19 13958977 13961555 TCF7L2 GTRD no Colon (HCT116) 108390517
chr19 13958977 13961555 TCF7L2 GTRD no Colon (HCT116) 108390518
chr19 13959035 13961421 ZNF143 GTRD no Epithelial (MCF-7) 21852526
chr19 13959035 13961421 ZNF143 GTRD no Epithelial (MCF-7) 108390521
chr19 13959035 13961421 ZNF143 GTRD no Epithelial (MCF-7) 108390522
chr19 13959042 13959797 TCF7L2 GTRD no Colon (HCT116) 21852527
chr19 13959042 13959797 TCF7L2 GTRD no Colon (HCT116) 108390523
chr19 13959105 13960270 TCF7L2 GTRD no Colon (HCT116) 21852528
chr19 13959105 13960270 TCF7L2 GTRD no Colon (HCT116) 108390524
chr19 13959105 13960270 TCF7L2 GTRD no Colon (HCT116) 108390525
chr19 13959165 13959783 ZNF274 GTRD no Bone Marrow (K562) 21852529
chr19 13959165 13959783 ZNF274 GTRD no Bone Marrow (K562) 108390526
chr19 13959170 13961220 ZNF143 GTRD no Epithelial (MCF-7) 21852530
chr19 13959170 13961220 ZNF143 GTRD no Epithelial (MCF-7) 108390527
chr19 13959170 13961220 ZNF143 GTRD no Epithelial (MCF-7) 108390528
chr19 13959174 13961648 ZNF143 GTRD no Epithelial (MCF-7) 21852531
chr19 13959174 13961648 ZNF143 GTRD no Epithelial (MCF-7) 108390529
chr19 13959174 13961648 ZNF143 GTRD no Epithelial (MCF-7) 108390530
chr19 13959187 13959874 ZNF274 GTRD no Blood (GM12878) 21852532
chr19 13959187 13959874 ZNF274 GTRD no Blood (GM12878) 108390531
chr19 13959245 13961705 TCF7L2 GTRD no Colon (HCT116) 21852533
chr19 13959245 13961705 TCF7L2 GTRD no Colon (HCT116) 108390532
chr19 13959245 13961705 TCF7L2 GTRD no Colon (HCT116) 108390533
chr19 13959301 13959775 ZNF274 GTRD no Bone Marrow (K562) 21852534
chr19 13959301 13959775 ZNF274 GTRD no Bone Marrow (K562) 108390534
chr19 13959381 13960694 ZNF274 GTRD no Bone Marrow (K562) 21852535
chr19 13959381 13960694 ZNF274 GTRD no Bone Marrow (K562) 108390535
chr19 13959381 13960694 ZNF274 GTRD no Bone Marrow (K562) 108390536
chr19 13959387 13960879 TCF7L2 GTRD no Colon (HCT116) 21852536
chr19 13959387 13960879 TCF7L2 GTRD no Colon (HCT116) 108390537
chr19 13959396 13961379 ZNF143 GTRD no Epithelial (MCF-7) 21852537
chr19 13959396 13961379 ZNF143 GTRD no Epithelial (MCF-7) 108390538
chr19 13959477 13961665 ZNF143 GTRD no Epithelial (MCF-7) 21852538
chr19 13959477 13961665 ZNF143 GTRD no Epithelial (MCF-7) 108390539
chr19 13959612 13960811 ZNF274 GTRD no Bone Marrow (K562) 21852539
chr19 13959612 13960811 ZNF274 GTRD no Bone Marrow (K562) 108390540
chr19 13959621 13959821 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21852540
chr19 13959621 13960017 ZNF274 GTRD no Liver (HepG2) 21852541
chr19 13959621 13960017 ZNF274 GTRD no Liver (HepG2) 108390541
chr19 13959675 13960597 ZNF274 GTRD no Bone Marrow (K562) 21852542
chr19 13959675 13960597 ZNF274 GTRD no Bone Marrow (K562) 108390542
chr19 13959675 13961041 ZNF143 GTRD no Epithelial (MCF-7) 21852543
chr19 13959675 13961041 ZNF143 GTRD no Epithelial (MCF-7) 108390543
chr19 13959689 13960594 ZNF274 GTRD no Cervix (HeLa-S3) 21852544
chr19 13959689 13960594 ZNF274 GTRD no Cervix (HeLa-S3) 108390544
chr19 13959691 13960215 TCF7L2 GTRD no Colon (HCT116) 21852545
chr19 13959691 13960215 TCF7L2 GTRD no Colon (HCT116) 108390545
chr19 13959708 13960489 ZNF274 GTRD no Blood (GM12878) 21852546
chr19 13959708 13960489 ZNF274 GTRD no Blood (GM12878) 108390546
chr19 13959721 13959734 DUXA JASPAR yes 112538095
chr19 13959722 13959733 DUX4 JASPAR yes 112538096
chr19 13959726 13959730 H1TF2 TRANSFAC yes 112538097
chr19 13959726 13959730 NFE TRANSFAC yes 112538098
chr19 13959726 13959730 SRF TRANSFAC yes 112538099
chr19 13959727 13959741 CREB3 JASPAR yes 112538100
chr19 13959728 13959738 MAX JASPAR yes 112538101
chr19 13959728 13959739 USF1 JASPAR yes 112538102
chr19 13959728 13959739 USF2 JASPAR yes 112538103
Genes associated with rs202043472[chr19:13959728], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More