EnhancerDB
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  3. rs202090346[chr17:1906056]
Enhancers that have rs202090346[chr17:1906056]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 1888491 1923135 enh16929
Liver Astrocyte Colon (HCT116) Adrenal Pancreas Uterus Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Lung (A549) Thyroid Peripheral Blood (MM.1S) Prostate (PC-3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs202090346[chr17:1906056]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 1906042 1906056 TLX1 JASPAR yes 52715521
chr17 1906046 1906061 RFX5 JASPAR yes 52715522
chr17 1906050 1906069 CTCF JASPAR yes 52715523
chr17 1906051 1906066 ZIC3 JASPAR yes 52715524
chr17 1906051 1906066 ZIC4 JASPAR yes 52715525
chr17 1906052 1906066 GLIS2 JASPAR yes 52715526
chr17 1906052 1906066 GLIS3 JASPAR yes 52715527
chr17 1906052 1906066 ZIC1 JASPAR yes 52715528
Genes associated with rs202090346[chr17:1906056], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More