EnhancerDB
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  3. rs2050556[chr1:201742717]
Enhancers that have rs2050556[chr1:201742717]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 201710292 201749335 enh12527
Cervix (HeLa-S3) Brain (SK-N-MC) Prostate (RWPE1) Esophagus Astrocyte Lung (A549) Stomach Muscle (A673) Placenta Thyroid Uterus Peripheral Blood (MM.1S) Lung (PC-9) Muscle (Myoblast) Neural Stem Cells (H9) Heart
Transcript factors that have rs2050556[chr1:201742717]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 201738081 201742956 ZNF143 GTRD no Epithelial (MCF-7) 107857096
chr1 201738081 201742956 ZNF143 GTRD no Epithelial (MCF-7) 107857097
chr1 201738082 201743153 ZNF143 GTRD no Epithelial (MCF-7) 107857098
chr1 201738082 201743153 ZNF143 GTRD no Epithelial (MCF-7) 107857099
chr1 201738150 201746951 ZNF143 GTRD no Epithelial (MCF-7) 107857100
chr1 201738150 201746951 ZNF143 GTRD no Epithelial (MCF-7) 107857101
chr1 201738150 201746951 ZNF143 GTRD no Epithelial (MCF-7) 107857102
chr1 201738449 201743729 ZNF143 GTRD no Epithelial (MCF-7) 107857103
chr1 201738449 201743729 ZNF143 GTRD no Epithelial (MCF-7) 107857104
chr1 201738601 201743177 ZNF143 GTRD no Epithelial (MCF-7) 107857106
chr1 201738601 201743177 ZNF143 GTRD no Epithelial (MCF-7) 107857107
chr1 201738751 201743050 ZNF143 GTRD no Epithelial (MCF-7) 107857109
chr1 201738751 201743050 ZNF143 GTRD no Epithelial (MCF-7) 107857110
chr1 201740997 201743152 ZNF143 GTRD no Epithelial (MCF-7) 107857142
chr1 201742457 201742992 ZNF143 GTRD no Epithelial (MCF-7) 107857143
chr1 201742711 201742724 DUXA JASPAR yes 34531942
chr1 201742714 201742728 ONECUT1 JASPAR yes 34531943
chr1 201742714 201742728 ONECUT2 JASPAR yes 34531944
chr1 201742714 201742728 ONECUT3 JASPAR yes 34531945
Genes associated with rs2050556[chr1:201742717], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More