EnhancerDB
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  3. rs2254998[chr12:53269472]
Enhancers that have rs2254998[chr12:53269472]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 53249369 53285465 enh14733
Bone Marrow (K562) Astrocyte Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Bone (Osteoblast) Lung (A549) Thyroid Pancreas (Panc1) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Muscle (A673)
Transcript factors that have rs2254998[chr12:53269472]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 53266838 53269794 ZNF143 GTRD no Epithelial (MCF-7) 21547696
chr12 53266838 53269794 ZNF143 GTRD no Epithelial (MCF-7) 108034458
chr12 53266838 53269794 ZNF143 GTRD no Epithelial (MCF-7) 108034459
chr12 53266945 53270088 ZNF143 GTRD no Epithelial (MCF-7) 21547698
chr12 53266945 53270088 ZNF143 GTRD no Epithelial (MCF-7) 108034461
chr12 53266945 53270088 ZNF143 GTRD no Epithelial (MCF-7) 108034462
chr12 53267138 53270034 ZNF274 GTRD no Blood (GM12878) 108034463
chr12 53267184 53269590 ZNF274 GTRD no Bone Marrow (K562) 21547701
chr12 53267184 53269590 ZNF274 GTRD no Bone Marrow (K562) 108034467
chr12 53267186 53269818 ZNF143 GTRD no Epithelial (MCF-7) 21547702
chr12 53267186 53269818 ZNF143 GTRD no Epithelial (MCF-7) 108034468
chr12 53267323 53269708 ZNF274 GTRD no Cervix (HeLa-S3) 21547709
chr12 53267323 53269708 ZNF274 GTRD no Cervix (HeLa-S3) 108034476
chr12 53267346 53269574 ZNF274 GTRD no Cervix (HeLa-S3) 21547714
chr12 53267346 53269574 ZNF274 GTRD no Cervix (HeLa-S3) 108034482
chr12 53267407 53269543 ZBTB33 GTRD no Lung (A549) 21547722
chr12 53267407 53269543 ZBTB33 GTRD no Lung (A549) 108034489
chr12 53267509 53269546 ZNF274 GTRD no Bone Marrow (K562) 21547732
chr12 53267509 53269546 ZNF274 GTRD no Bone Marrow (K562) 108034501
chr12 53267559 53270146 ZNF143 GTRD no Epithelial (MCF-7) 21547749
chr12 53267559 53270146 ZNF143 GTRD no Epithelial (MCF-7) 108034519
chr12 53267571 53269522 ZNF274 GTRD no Cervix (HeLa-S3) 21547753
chr12 53267571 53269522 ZNF274 GTRD no Cervix (HeLa-S3) 108034523
chr12 53267588 53269522 ZNF274 GTRD no Cervix (HeLa-S3) 21547763
chr12 53267588 53269522 ZNF274 GTRD no Cervix (HeLa-S3) 108034535
chr12 53267713 53269591 ZBTB33 GTRD no Lung (A549) 21547784
chr12 53267713 53269591 ZBTB33 GTRD no Lung (A549) 108034564
chr12 53268065 53270761 ZNF274 GTRD no Bone Marrow (K562) 21547904
chr12 53268065 53270761 ZNF274 GTRD no Bone Marrow (K562) 108034746
chr12 53268065 53270761 ZNF274 GTRD no Bone Marrow (K562) 108034747
chr12 53268065 53270802 ZNF274 GTRD no Bone Marrow (K562) 21547905
chr12 53268065 53270802 ZNF274 GTRD no Bone Marrow (K562) 108034748
chr12 53268065 53270802 ZNF274 GTRD no Bone Marrow (K562) 108034749
chr12 53269039 53269651 ZNF274 GTRD no Bone Marrow (K562) 21547952
chr12 53269089 53269703 ZNF274 GTRD no Bone Marrow (K562) 21547953
chr12 53269363 53270244 ZNF274 GTRD no Bone Marrow (K562) 21547954
chr12 53269467 53269477 BHLHE40 JASPAR yes 120957879
chr12 53269467 53269477 CLOCK JASPAR yes 120957880
chr12 53269467 53269477 HEY1 JASPAR yes 120957881
chr12 53269467 53269477 MAX JASPAR yes 120957882
chr12 53269467 53269477 MNT JASPAR yes 120957883
chr12 53269469 53269474 MYC TRANSFAC yes 120957884
chr12 53269469 53269474 USF1 TRANSFAC yes 120957885
chr12 53269469 53269474 USF2 TRANSFAC yes 120957886
chr12 53269472 53269486 POU4F1 JASPAR yes 120957887
chr12 53269472 53269488 POU4F2 JASPAR yes 120957888
chr12 53269472 53269488 POU4F3 JASPAR yes 120957889
Genes associated with rs2254998[chr12:53269472], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More