EnhancerDB
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Enhancers that have rs239962[chr1:201684188]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 201670008 201708415 enh12526
Bone Marrow (K562) Astrocyte Colon (HCT116) Pancreas Uterus Epithelial (MCF-7) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Breast Muscle (Myoblast) Spleen Prostate (RWPE1) Lung Muscle (A673) Heart
chr1 201683757 201684240 vista4573
VISTA
Transcript factors that have rs239962[chr1:201684188]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 201683576 201684287 POLR2A UCSC Txn Factor no Conserved 107856904
chr1 201683650 201684300 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21365229
chr1 201683650 201684300 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107856910
chr1 201683674 201684334 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21365233
chr1 201683674 201684334 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107856914
chr1 201683718 201684228 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21365244
chr1 201683718 201684228 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107856925
chr1 201683719 201684223 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21365246
chr1 201683719 201684223 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107856927
chr1 201683736 201684200 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21365249
chr1 201683736 201684200 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107856930
chr1 201683755 201684211 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21365256
chr1 201683755 201684211 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107856940
chr1 201683787 201684223 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 21365263
chr1 201683787 201684223 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 107856947
chr1 201683862 201684338 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21365276
chr1 201683862 201684338 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107856962
chr1 201683963 201684643 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21365280
chr1 201683963 201684643 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107856966
chr1 201684099 201684303 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 21365281
chr1 201684099 201684303 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 107856967
chr1 201684184 201684199 FOXA1 JASPAR yes 34523601
chr1 201684184 201684199 FOXA1 JASPAR yes 118432800
chr1 201684185 201684200 FOXP1 JASPAR yes 34523602
chr1 201684185 201684200 FOXP1 JASPAR yes 118432801
chr1 201684186 201684197 FOXP2 JASPAR yes 34523603
chr1 201684186 201684197 FOXP2 JASPAR yes 118432802
chr1 201684186 201684200 FOXF2 JASPAR yes 34523604
chr1 201684186 201684200 FOXF2 JASPAR yes 118432803
chr1 201684187 201684195 FOXD1 JASPAR yes 34523605
chr1 201684187 201684195 FOXO3 JASPAR yes 34523606
chr1 201684187 201684195 FOXD1 JASPAR yes 118432804
chr1 201684187 201684195 FOXO3 JASPAR yes 118432805
chr1 201684188 201684195 FOXD2 JASPAR yes 34523607
chr1 201684188 201684195 FOXI1 JASPAR yes 34523608
chr1 201684188 201684195 FOXL1 JASPAR yes 34523609
chr1 201684188 201684195 FOXO4 JASPAR yes 34523610
chr1 201684188 201684195 FOXO6 JASPAR yes 34523611
chr1 201684188 201684195 FOXP3 JASPAR yes 34523612
chr1 201684188 201684195 FOXD2 JASPAR yes 118432806
chr1 201684188 201684195 FOXI1 JASPAR yes 118432807
chr1 201684188 201684195 FOXL1 JASPAR yes 118432808
chr1 201684188 201684195 FOXO4 JASPAR yes 118432809
chr1 201684188 201684195 FOXO6 JASPAR yes 118432810
chr1 201684188 201684195 FOXP3 JASPAR yes 118432811
chr1 201684188 201684199 FOXA1 JASPAR yes 34523613
chr1 201684188 201684199 FOXA1 JASPAR yes 118432812
Genes associated with rs239962[chr1:201684188], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More