EnhancerDB
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  3. rs239993[chr1:201698043]
Enhancers that have rs239993[chr1:201698043]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 201670008 201708415 enh12526
Bone Marrow (K562) Astrocyte Colon (HCT116) Pancreas Uterus Epithelial (MCF-7) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Breast Muscle (Myoblast) Spleen Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs239993[chr1:201698043]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 201698028 201698047 RFX2 JASPAR yes 34525571
chr1 201698030 201698045 RFX5 JASPAR yes 34525572
chr1 201698032 201698048 RFX2 JASPAR yes 34525573
chr1 201698032 201698048 RFX3 JASPAR yes 34525574
chr1 201698032 201698048 RFX4 JASPAR yes 34525575
chr1 201698032 201698048 RFX5 JASPAR yes 34525576
chr1 201698038 201698048 NFIA JASPAR yes 34525577
chr1 201698039 201698048 HIC2 JASPAR yes 34525578
chr1 201698040 201698046 NFIC JASPAR yes 34525579
Genes associated with rs239993[chr1:201698043], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More