EnhancerDB
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  3. rs2469823[chr17:39006842]
Enhancers that have rs2469823[chr17:39006842]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 39001145 39015955 enh17144
Skin (Keratinocyte) Prostate (PC-3) Cervix (HeLa-S3) Brain (SK-N-MC) Prostate (RWPE1) Esophagus Astrocyte Muscle (A673) Placenta Colon (HCT116) Uterus Lung (PC-9) Breast Muscle (Myotube) Neural Stem Cells (H9) Epithelial (MCF-7)
Transcript factors that have rs2469823[chr17:39006842]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 39006517 39007021 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21756959
chr17 39006581 39006901 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21756960
chr17 39006583 39006923 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21756961
chr17 39006583 39006927 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21756962
chr17 39006587 39007057 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 21756963
chr17 39006595 39006925 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21756964
chr17 39006608 39006912 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21756965
chr17 39006614 39006870 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21756966
chr17 39006619 39006895 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21756967
chr17 39006639 39006855 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21756968
chr17 39006661 39007031 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21756969
chr17 39006663 39007047 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21756970
chr17 39006815 39007191 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21756971
chr17 39006836 39006848 PKNOX1 JASPAR yes 54240315
chr17 39006842 39006847 GATA1 TRANSFAC yes 54240316
Genes associated with rs2469823[chr17:39006842], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More