EnhancerDB
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  3. rs2471602[chr12:46942235]
Enhancers that have rs2471602[chr12:46942235]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 46935165 46958895 enh14680
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Adrenal Uterus Blood (T-cell) Kidney Epithelial (MCF-7) Skin (Keratinocyte) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Breast Liver (HepG2) Prostate (RWPE1) Muscle (A673)
Transcript factors that have rs2471602[chr12:46942235]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 46941624 46942304 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21542293
chr12 46941711 46943418 ZBTB33 GTRD no Brain (SK-N-SH) 108027722
chr12 46941880 46943581 ZBTB33 GTRD no Brain (SK-N-SH) 108027723
chr12 46941880 46943581 ZBTB33 GTRD no Brain (SK-N-SH) 108027724
chr12 46941948 46943296 ZBTB33 GTRD no Brain (SK-N-SH) 108027725
chr12 46941982 46943392 ZBTB33 GTRD no Brain (SK-N-SH) 108027726
chr12 46941997 46943329 ZBTB33 GTRD no Brain (SK-N-SH) 108027727
chr12 46942046 46943219 ZBTB33 GTRD no Brain (SK-N-SH) 108027728
chr12 46942054 46943155 ZBTB33 GTRD no Brain (SK-N-SH) 108027729
chr12 46942095 46943180 ZNF274 GTRD no Cervix (HeLa-S3) 21542307
chr12 46942095 46943180 ZNF274 GTRD no Cervix (HeLa-S3) 108027730
chr12 46942122 46943366 ZNF274 GTRD no Cervix (HeLa-S3) 21542308
chr12 46942122 46943366 ZNF274 GTRD no Cervix (HeLa-S3) 108027731
chr12 46942222 46942239 RXRA JASPAR yes 120636277
Genes associated with rs2471602[chr12:46942235], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More