EnhancerDB
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  3. rs2485471[chr1:155860628]
Enhancers that have rs2485471[chr1:155860628]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 155856385 155866134 enh12292
Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Bone (Osteoblast) Blood (OCI-LY7) Lung (A549) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673)
Transcript factors that have rs2485471[chr1:155860628]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 155858797 155861096 STAT3 GTRD no Blood (OCI-LY7) 21341683
chr1 155859228 155860639 TCF7L2 GTRD no Colon (HCT116) 21341717
chr1 155859717 155860936 TCF7L2 GTRD no Colon (HCT116) 21341726
chr1 155859782 155860793 ZNF143 GTRD no Epithelial (MCF-7) 21341727
chr1 155859923 155860843 TCF7L2 GTRD no Colon (HCT116) 21341728
chr1 155860023 155860639 TCF7L2 GTRD no Colon (HCT116) 21341729
chr1 155860209 155860730 ZNF274 GTRD no Liver (HepG2) 21341730
chr1 155860249 155860917 ZNF274 GTRD no Liver (HepG2) 21341731
chr1 155860277 155860975 ZNF274 GTRD no Liver (HepG2) 21341732
chr1 155860295 155860862 ZNF274 GTRD no Liver (HepG2) 21341733
chr1 155860427 155860765 ZNF274 GTRD no Liver (HepG2) 21341734
chr1 155860433 155860746 ZNF274 GTRD no Liver (HepG2) 21341735
chr1 155860474 155860868 ZNF274 GTRD no Liver (HepG2) 21341736
chr1 155860611 155860631 RREB1 JASPAR yes 32366125
chr1 155860611 155860632 IRF1 JASPAR yes 32366126
chr1 155860612 155860633 IRF1 JASPAR yes 32366127
chr1 155860616 155860630 IRF7 JASPAR yes 32366128
chr1 155860616 155860631 IRF9 JASPAR yes 32366129
chr1 155860617 155860635 IRF2 JASPAR yes 32366130
chr1 155860617 155860638 IRF1 JASPAR yes 32366131
chr1 155860618 155860633 FOXP1 JASPAR yes 32366133
chr1 155860618 155860639 IRF1 JASPAR yes 32366134
chr1 155860619 155860628 SRY JASPAR yes 32366135
chr1 155860619 155860631 FOXC2 JASPAR yes 32366136
chr1 155860619 155860634 STAT2 JASPAR yes 32366137
chr1 155860622 155860634 IRF1 JASPAR yes 32366138
chr1 155860622 155860636 IRF7 JASPAR yes 32366139
chr1 155860622 155860636 IRF8 JASPAR yes 32366140
chr1 155860622 155860637 IRF9 JASPAR yes 32366141
chr1 155860628 155860640 IRF1 JASPAR yes 32366142
chr1 155860628 155860642 IRF7 JASPAR yes 32366143
Genes associated with rs2485471[chr1:155860628], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More