EnhancerDB
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  3. rs2620774[chr12:67988286]
Enhancers that have rs2620774[chr12:67988286]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 67982265 67991415 enh14800
Skin (Keratinocyte) Prostate (PC-3) Brain (SK-N-MC) Large Intestine Blood (T-cell) Esophagus Stomach Placenta Peripheral Blood (MM.1S) Lung (PC-9) Breast Neural Stem Cells (H9) Thymus Epithelial (MCF-7)
Transcript factors that have rs2620774[chr12:67988286]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 67987418 67988853 ZNF143 GTRD no Epithelial (MCF-7) 21553839
chr12 67987442 67988991 ZNF143 GTRD no Epithelial (MCF-7) 21553840
chr12 67987590 67988984 ZNF143 GTRD no Epithelial (MCF-7) 21553841
chr12 67987667 67988778 ZNF143 GTRD no Epithelial (MCF-7) 21553842
chr12 67987692 67988632 ZNF143 GTRD no Epithelial (MCF-7) 21553844
chr12 67987710 67989137 ZNF143 GTRD no Epithelial (MCF-7) 21553845
chr12 67987714 67988849 ZNF143 GTRD no Epithelial (MCF-7) 21553846
chr12 67987757 67988379 ZNF143 GTRD no Epithelial (MCF-7) 21553847
chr12 67987765 67988366 ZNF143 GTRD no Epithelial (MCF-7) 21553848
chr12 67987951 67988972 ZNF143 GTRD no Epithelial (MCF-7) 21553849
chr12 67987969 67988970 ZNF143 GTRD no Epithelial (MCF-7) 21553850
chr12 67988115 67988798 ZNF143 GTRD no Epithelial (MCF-7) 21553851
chr12 67988132 67988848 ZNF143 GTRD no Epithelial (MCF-7) 21553852
chr12 67988159 67988617 ZNF143 GTRD no Epithelial (MCF-7) 21553853
chr12 67988185 67988661 ZNF143 GTRD no Epithelial (MCF-7) 21553854
chr12 67988220 67988558 ZNF143 GTRD no Epithelial (MCF-7) 21553855
chr12 67988225 67988931 ZNF143 GTRD no Epithelial (MCF-7) 21553856
chr12 67988237 67988718 ZNF143 GTRD no Epithelial (MCF-7) 21553857
chr12 67988246 67988774 ZNF143 GTRD no Epithelial (MCF-7) 21553858
chr12 67988285 67988289 LFA1 TRANSFAC yes 121599193
Genes associated with rs2620774[chr12:67988286], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More