EnhancerDB
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  3. rs2794399[chr1:225942458]
Enhancers that have rs2794399[chr1:225942458]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 225938095 225960315 enh12725
Liver Astrocyte Pancreas Uterus Epithelial (MCF-7) Stomach Bone (Osteoblast) Blood (OCI-LY7) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs2794399[chr1:225942458]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 225941037 225946019 STAT3 GTRD no Blood (OCI-LY7) 21385734
chr1 225942359 225943098 SOX2 GTRD no Neural Stem Cells (H9) 21385748
chr1 225942403 225943099 SOX2 GTRD no Neural Stem Cells (H9) 21385749
chr1 225942415 225942917 SOX2 GTRD no Neural Stem Cells (H9) 21385750
chr1 225942418 225943035 SOX2 GTRD no Neural Stem Cells (H9) 21385751
chr1 225942428 225942884 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21385752
Genes associated with rs2794399[chr1:225942458], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More
chr1 225997794 226033260 + EPHX1 ENSG00000143819.8 225997794 55336 Spleen 0.000158388 1889