EnhancerDB
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  3. rs28370020[chr1:223904606]
Enhancers that have rs28370020[chr1:223904606]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 223886085 223931782 enh12712
Bone Marrow (K562) Brain (SK-N-MC) Colon (HCT116) Adrenal Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Ovary Bone (Osteoblast) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs28370020[chr1:223904606]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 223904267 223904637 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21383915
chr1 223904267 223904637 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107873104
chr1 223904460 223904960 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 107873105
chr1 223904604 223904608 LFA1 TRANSFAC yes 35671805
chr1 223904606 223904625 REST JASPAR yes 35671806
Genes associated with rs28370020[chr1:223904606], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More