EnhancerDB
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  3. rs28398035[chr1:153478212]
Enhancers that have rs28398035[chr1:153478212]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 153476105 153501977 enh12269
Bone Marrow (K562) Astrocyte Colon (HCT116) Adrenal Uterus Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Ovary Bone (Osteoblast) Pancreas (Panc1) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Breast Spleen Muscle (Myotube) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs28398035[chr1:153478212]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 153477945 153479566 ZNF143 GTRD no Epithelial (MCF-7) 21339427
chr1 153478074 153479526 ZNF143 GTRD no Epithelial (MCF-7) 21339428
chr1 153478117 153479248 ZNF143 GTRD no Epithelial (MCF-7) 21339429
chr1 153478186 153479436 ZNF143 GTRD no Epithelial (MCF-7) 21339430
chr1 153478205 153478223 NFYA JASPAR yes 32254118
chr1 153478208 153478224 NFYA JASPAR yes 32254119
chr1 153478211 153478226 NFYB JASPAR yes 32254120
Genes associated with rs28398035[chr1:153478212], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More