EnhancerDB
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  3. rs28409800[chr12:125394461]
Enhancers that have rs28409800[chr12:125394461]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 125380716 125396135 enh2679
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Adrenal Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Kidney Skin (Keratinocyte) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Blood (OCI-LY7) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Heart
Transcript factors that have rs28409800[chr12:125394461]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 125393675 125397217 POLR2A UCSC Txn Factor no Conserved 108070324
chr12 125393816 125396596 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21583478
chr12 125393816 125396596 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108070325
chr12 125394052 125396171 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21583483
chr12 125394052 125396171 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 108070326
chr12 125394338 125394954 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21583486
chr12 125394371 125395723 TAF1 ENCODE Uniform TFBS no Brain (SK-N-SH) 21583487
chr12 125394371 125395723 TAF1 ENCODE Uniform TFBS no Brain (SK-N-SH) 108070327
chr12 125394386 125396157 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21583488
chr12 125394386 125396157 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108070328
chr12 125394451 125396149 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 108070329
chr12 125394453 125395941 ZBTB33 ENCODE Uniform TFBS no Colon (HCT116) 108070330
Genes associated with rs28409800[chr12:125394461], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More