EnhancerDB
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  3. rs28417827[chr1:19324393]
Enhancers that have rs28417827[chr1:19324393]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 19322701 19342495 enh11568
Bone Marrow (K562) Liver Astrocyte Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Brain (SK-N-SH) Bone (Osteoblast) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Muscle (A673)
Transcript factors that have rs28417827[chr1:19324393]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 19323854 19324846 TCF7L2 GTRD no Colon (HCT116) 107802294
chr1 19324382 19324393 ESRRA JASPAR yes 27168741
chr1 19324382 19324395 NR2F1 JASPAR yes 27168742
chr1 19324383 19324401 ESR2 JASPAR yes 27168743
chr1 19324385 19324400 ESR2 JASPAR yes 27168744
chr1 19324385 19324405 ESR1 JASPAR yes 27168745
Genes associated with rs28417827[chr1:19324393], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More