EnhancerDB
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  3. rs28439818[chr1:203505609]
Enhancers that have rs28439818[chr1:203505609]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 203501205 203511475 enh12557
Skin (Keratinocyte) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Prostate (RWPE1) Esophagus Astrocyte Lung (PC-9) Bone (Osteoblast) Stomach Placenta Muscle (Myoblast) Pancreas Uterus Epithelial (MCF-7)
Transcript factors that have rs28439818[chr1:203505609]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 203504061 203505996 ZNF274 GTRD no Cervix (HeLa-S3) 21369257
chr1 203504238 203506100 ZNF143 GTRD no Epithelial (MCF-7) 21369259
chr1 203504266 203506203 ZNF274 GTRD no Cervix (HeLa-S3) 21369261
chr1 203504266 203506203 ZNF274 GTRD no Cervix (HeLa-S3) 107859014
chr1 203504292 203506128 ZNF143 GTRD no Epithelial (MCF-7) 21369265
chr1 203504292 203506128 ZNF143 GTRD no Epithelial (MCF-7) 107859015
chr1 203504303 203505858 ZNF274 GTRD no Cervix (HeLa-S3) 21369266
chr1 203505327 203505646 ZNF143 GTRD no Epithelial (MCF-7) 21369282
chr1 203505338 203505694 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21369283
chr1 203505602 203505609 NKX3-1 JASPAR yes 34636632
chr1 203505606 203505610 TEAD2 TRANSFAC yes 34636633
chr1 203505606 203505622 SOX8 JASPAR yes 34636634
Genes associated with rs28439818[chr1:203505609], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More